Performance and Architecture Laboratory (PAL)
Los Alamos National Laboratory
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Team Publications

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Books

  • Beniamino Di Martino, Jack Dongarra, Adolfy Hoisie, Laurence Tianruo Yang, Hans Zima (eds.): Engineering the GRID: Status and Perspectives, American Scientific Publishers, ISBN: 1588830381, January 2006. Hardcover - 500 pages.
      BibTeX   
     
  • Dror Feitelson, Eitan Frachtenberg, Larry Rudolph, Uwe Schwiegelshohn (eds.): Job Scheduling Strategies for Parallel Processing: 11th International Workshop, JSSPP 2005, Revised Selected Papers (Lecture Notes in Computer Science), Springer-Verlag, December 2005. Available from Springer-Verlag and Amazon
      BibTeX   
     
  • Vladimir Getov, Michael Gerndt, Adolfy Hoisie, Allen Malony, Barton Miller (eds.): Performance Analysis and Grid Computing, Kluwer Academic Publishers, ISBN: 1-4020-7693-2, March 2004. Paperback - 290 pages. Amazon link
      BibTeX   
     
  • Stefan Goedecker, Adolfy Hoisie. Performance Optimization of Numerically Intensive Codes (Software, Environments, Tools). Society for Industrial & Applied Mathematics, ISBN: 0898714842, March 2001. Paperback - 173 pages. Amazon link
      BibTeX   
     

    • Book Chapters

  •  Scott Pakin. High Performance Interconnects for Massively Parallel Systems. In Ada Gavrilovska (eds.): Attaining High Performance Communications: A Vertical Approach, 1--23, September 2009.
      BibTeX   
     
  • Darren J. Kerbyson, Adolfy Hoisie. A Performance Analysis of Two-Level Heterogeneous Processing Systems on Wavefront Algorithms. In Eugene John, Juan Rubio (eds.): Unique Chips and Systems, 259--279, November 2007.
      BibTeX   
     
  • Darren J. Kerbyson, Kevin J. Barker, Kei Davis. Analysis of the Weather Research and Forcasting (WRF) Model on Large-scale Systems. In Christian Bischof, Martin Bucker, Paul Gibbon, Gerhard Joubert, Thomas Lippert, Bernd Mohr, Frans Peters (eds.): Parallel Computing: Architectures, Algorithms and Applications, Juelich, Germany, NIC 38 89--98, 2007.
      BibTeX   
     
  • Juan Fernandez, Fabrizio Petrini, Eitan Frachtenberg. Achieving Predictable and Scalable Performance with BCS-MPI. In Beniamino Di Martino, Jack Dongarra, Adolfy Hoisie, Laurence T. Yang, Hans Zima (eds.): Engineering the Grid: Status and Perspective, January 2006.
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Shawn D. Pautz. Performance Modeling of Deterministic Transport Computations. In V. Getov, B. Miller (eds.): Performance Analysis and Grid Computing, 21--39, November 2003.
      BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. Verifying Large-Scale System Performance During Installation using Modeling. In L.T. Yang, Y. Pan (eds.): High Performance Scientific and Engineering Computing, Hardware/Software Support, 143--156, November 2003.
      BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie. Sizing Equivalent Performing Large-Scale Systems Using Modeling. In A. Veidenbaum, K. Joe (eds.): Innovative Architecture for Future Generation High-Performance Processors and Systems, 46--55, September 2003.
      BibTeX   
     
  • Darren J. Kerbyson, Harvey J. Wasserman, Adolfy Hoisie. Exploring Advanced Architectures using Performance Prediction. In A. Veidenbaum, K. Joe (eds.): Innovative Architecture for Future Generation High-Performance Processors and Systems, 27--40, September 2002.
      BibTeX    Paper (PDF)   
     

    • Journal Articles

  •  Kei Davis, Kevin Barker, Darren J. Kerbyson. Performance Prediction Via Modeling: A Case Study of the ORNL Cray XT4 Upgrade. In Parallel Processing Letters, 19 (4): To appear December 2009. Parallel Processing Letters link
     
     
  •  Jose Carlos Sancho, Darren J Kerbyson. Optimizing Multiple Conjugate Gradient Solvers for Large-Scale Systems. In Concurrency and Computation:Practice and Experience, 2009. LA-UR 08-07349
      Abstract (text)    BibTeX   
     
  •  Olaf Lubeck, Michael Lang, Ram, Srinivasan, Greg Johnson. Implementation and performance modeling of deterministic particle transport (Sweep3D) on the IBM Cell/B.E. In Scientific Programming, 17 To appear 2009. LA-UR 08-3387
      BibTeX    Preprint (PDF)   
     
  •  Scott Pakin, Michael Lang, Darren Kerbyson. The Reverse-acceleration Model for Programming Petascale Hybrid Systems. In IBM Journal of Research and Development, 53 (5): To appear 2009. LA-UR 09-02035
      BibTeX   
     
  • Darren J. Kerbyson, Mike Lang, Greg Johnson. Infiniband Routing Table Optimizations for Scientific Applications. In Parallel Processing Letters, December 2008.
      BibTeX   
     
  • Kevin Barker, Kei Davis, Adolfy Hoisie, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. A Performance Evaluation of the Nehalem Quad-core Processor for Scientific Computing. In Parallel Processing Letters, December 2008.
      BibTeX    Preprint (PDF)   
     
  • Scott Pakin. The Design and Implementation of a Domain-Specific Language for Network Performance Testing. In IEEE Transactions on Parallel and Distributed Systems, 18 (10): 1436-1449, October 2007. LA-UR 06-0398
      BibTeX    Preprint (PDF)   
     
  • Ram Srinivasan, Eitan Frachtenberg, Olaf Lubeck, Scott Pakin, Jeanine Cook. An Idealistic Neuro-PPM Branch Predictor. In The Journal of Instruction-Level Parallelism, 9 May 2007. LA-UR 06-7360
      BibTeX    Preprint (PDF)   
     
  • Song Jiang, Kei Davis, Xiaodong Zhang. Coordinated Multi-Level Buffer Cache Management with Consistent Access Locality Quantification. In IEEE Transactions on Computers, 2007.
     
     
  • Eitan Frachtenberg, Fabrizio Petrini, Juan Fernandez, Scott Pakin. STORM: Scalable Resource Management for Large-Scale Parallel Computers. In IEEE Transactions on Computers, 55 (12): 1572-1587, December 2006. LA-UR 02-2361
      BibTeX    Preprint (PDF)   
     
  • Mark M. Mathis, Darren J. Kerbyson, Adolfy Hoisie. A Performance Model of non-Deterministic Particle Transport on Large-Scale Systems. In Future Generation Computer Systems, 22 (3): 324--335, February 2006. LA-UR 02-7313
      BibTeX    Preprint (PDF)   
     
  • Daniel P. Spooner, Darren J. Kerbyson. Performance Feature Identification by Comparative Trace Analysis. In Future Generation Computer Systems, 22 (3): 369--380, February 2006.
      BibTeX    Preprint (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. Use of Predictive Performance Modeling During Large-Scale System Installation. In Parallel Processing Letters, 15 (4): 387--396, December 2005.
      BibTeX    Preprint   
     
  • Mark M. Mathis, Darren J. Kerbyson. A General Performance Model of Structured and Unstructured Mesh Particle Transport Computations. In J. Supercomputing, 34 (2): 181--199, November 2005. LA-UR 04-8794
      BibTeX    Preprint (PDF)   
     
  • Eitan Frachtenberg, Dror G. Feitelson, Fabrizio Petrini, Juan Fernandez. Adaptive Parallel Job Scheduling with Flexible CoScheduling. In IEEE Transactions on Parallel and Distributed Systems, 11 (16): 1066-01077, November 2005. LA-UR 05-1680
      Abstract (text)    BibTeX    Preprint (PDF)   
     
  • Darren J. Kerbyson, Philip W. Jones. A Performance Model of the Parallel Ocean Program. In Int. J. High Performance Computing Applications, 19 (5): 261--276, August 2005. LA-UR 04-8793
      BibTeX    Preprint (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. A Performance Comparison between the Earth Simulator and other Top Terascale Systems on a characteristic ASCI Workload. In Concurrency and Computation Practise and Experience, 17 (10): 1219--1238, August 2005.
      BibTeX    Preprint (PDF)   
     
  • Leon Arber, Scott Pakin. The Impact of Message-Buffer Alignment on Communication Performance. In Parallel Processing Letters, 15 49-65, June 2005. LA-UR 04-6066
      BibTeX    Preprint (PDF)   
     
  • Fabrizio Petrini, Juan Fernandez, Adam Moody, Eitan Frachtenberg, Dhabaleswar K. Panda. NIC-based Reduction Algorithms for Large-scale Clusters. In International Journal of High Performance Computing and Networking, 2005.
      Abstract (text)    BibTeX    Preprint (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Scott Pakin, Fabrizio Petrini, Harvey J. Wasserman. A Performance Evaluation of an Alpha EV7 Processing Node. In Int. Journal of High Performance Computing Applications, 18 (2): 199--209, 2004.
      BibTeX    Preprint (PDF)   
     
  • Kenneth L. Summers, Thomas P. Caudell, Kathryn Berkbigler, Brian Bush, Kei Davis, Steve Smith. Graph Visualization for the Analysis of the Structure and Dynamics of Extreme-Scale Supercomputers. In Journal of Information Visualization, 2004. Revised and expanded SoftVis'03 conference paper
      BibTeX   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. Modeling the Performance of Large-Scale Systems. In IEE Proceedings: Software, 150 (4): 214--221, August 2003.
      BibTeX    Preprint (PDF)   
     
  • Salvador Coll, Eitan Frachtenberg, Fabrizio Petrini, Adolfy Hoisie, Leonid Gurvits. Using Multirail Networks in High-Performance Clusters. In Concurrency and Computation: Practice and Experience, 15 (7-8): 625--651, April 2003.
      Abstract (text)    BibTeX    Preprint (PDF)   
     
  • Fabrizio Petrini, Eitan Frachtenberg, Adolfy Hoisie, Salvador Coll. Performance Evaluation of the Quadrics Interconnection Network. In Journal of Cluster Computing, 6 (2): 125--142, April 2003.
      Abstract (text)    BibTeX    Preprint (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. A Comparison Between the Earth Simulator and AlphaServer Systems using Predictive Application Performance Models. In Computer Architecture News, December 2002.
      BibTeX   
     
  • Fabrizio Petrini, Wu-chun Feng, Adolfy Hoisie, Salvador Coll, Eitan Frachtenberg. The Quadrics Network (QsNet): High-Performance Clustering Technology. In IEEE Micro, 22 (1): 46--57, February 2002.
      Abstract (text)    BibTeX    Preprint (PDF)   
     
  • Fabrizio Petrini, Wu-Cheng Feng. Improved Resource Utilization with Buffered Coscheduling. In Journal of Parallel Algorithms and Applications, 16 2001.
      BibTeX    Preprint (PDF)   
     
  • Adolfy Hoisie, Olaf M. Lubek, Harvey J. Wasserman. Performance and Scalabilty Analysis of Teraflop-Scale Parallel Architectures Using Multidimensional Wavefront Applications. In Int. J. High Performance Computing Applications, 14 (4): 330--347, November 2000.
      BibTeX    Preprint (PDF)   
     
  • Adolfy Hoisie, Olaf M. Lubek, Harvey J. Wasserman. Performance Analysis of Wavefront Algorithms on Very-Large Scale Distributed Systems. In Wide Area Networks and High Performance Computing, Lectures Notes in Control and Information Sciences, 249 171--187, 1999.
      BibTeX    Preprint (PDF)   
     

    • Conference Papers

  • Xuechen Zhang, Song Jiang, Kei Davis. Making Resonance a Common Case: A High-Performance Implementation of Collective I/O on Parallel File System. In Proceedings of the IEEE/ACM Int. Parallel and Distributed Processing Symposium (IPDPS), Rome, Italy, May 2009.
      BibTeX    Paper (PDF)   
     
  • Kevin Barker, Kei Davis, Adolfy Hoisie, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. Entering the Petaflop Era: The Architecture and Performance of Roadrunner". In Proceedings of the IEEE/ACM Supercomputing (SC08), Austin, TX, November 2008.
      BibTeX    Paper (PDF)    Presentation (PowerPoint)   
     
  • Jose Carlos Sancho, Darren J Kerbyson. Improving the Performance of Multiple Conjugate Gradient Solvers by Exploiting Overlap. In Proceedings of the IEEE International Euro-Par Conference (Euro-Par 2008), Las Palmas de Gran Canaria, Spain, 2008. LA-UR 07-2610
      Abstract (text)    BibTeX   
     
  • Kevin Barker, Kei Davis, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. An Early Performance Evaluation of the SiCortex SC648. In Proceedings of the Workshop on Unique Chips and Systems (UCAS4), IEEE Int. Symposium on Performance Analysis of Systems and Software (ISPASS), Austin, TX, April 2008.
      BibTeX   
     
  • Gregory Johnson, Darren J. Kerbyson, Mike Lang. Optimization of Infiniband for Scientific Applications. In Proceedings of the Workshop on Large-Scale Parallel Processing (LSPP), IEEE/ACM Int. Parallel and Distributed Processing Symposium (IPDPS), Miami, FL, April 2008.
      BibTeX   
     
  • Jose C. Sancho, Darren J. Kerbyson. Analysis of Double Buffering on two Different Multicore Architectures: Quad-core Opteron and the Cell-BE. In Proceedings of the IEEE/ACM Int. Parallel and Distributed Processing Symposium (IPDPS), Miami, FL, April 2008.
      BibTeX   
     
  • Scott Pakin. Receiver-initiated Message Passing over RDMA Networks. In Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium (IPDPS 2008), Miami, Florida, April 2008. LA-UR 07-6856
      BibTeX    Paper (PDF)   
     
  • Kevin Barker, Kei Davis, Adolfy Hoisie, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. Experiences in Scaling Scientific Applications on Current-generation Quad-core Processors. In Proceedings of the Workshop on Large-Scale Parallel Processing (LSPP), IEEE/ACM Int. Parallel and Distributed Processing Symposium (IPDPS), Miami, FL, April 2008.
      BibTeX   
     
  • Jose Carlos Sancho, Darren J Kerbyson. Analysis of Double Buffering on two Different Multicore Architectures: Quad-core Opteron and the Cell-BE. In Proceedings of the IEEE International Parallel & Distributed Processing Symposium (IPDPS 2008), Miami, FL, 2008. LA-UR 07-7058
      BibTeX   
     
  • Jose C Sancho, Darren J Kerbyson, Kevin J Barker. Efficient Offloading of Collective Communications in Large-Scale Systems. In Proceedings of the IEEE International Conference on Cluster Computing (Cluster 2007), Austin, TX, 2007. LA-UR 07-3688
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Scott Pakin, Greg Johnson. Performance Analysis of a User-level Memory Server. In Proceedings of the 2007 IEEE International Conference on Cluster Computing (Cluster 2007), Austin, Texas, pp. 249-258, September 2007. LA-UR 07-3366
      BibTeX    Paper (PDF)   
     
  • Gilad Shainer, Diego Crupnicoff, Darren J Kerbyson. Reliability of InfiniBand networks in Large-Scale Clusters. In Proceedings of the International Supercomputing Conference (ISC07), Dresden, Germany, June 2007.
      BibTeX   
     
  • Eitan Zahavi, Gregory Johnson, Darren J. Kerbyson, Michael Lang. Optimized InfiniBand Fat-tree Routing for Shift All-to-All Communication Pattern. In Proceedings of the International Supercomputing Conference (ISC07), Dresden, Germany, June 2007.
      BibTeX   
     
  • Xiaoning Ding, Song Jiang, Kei Davis, Feng Chen, Xiaodong Zhang. DiskSeen: A Prefetch Policy Based on Disk Layout and Access History. In Proceedings of the USENIX Annual Technical Conference, Santa Clara, CA, 2007.
      BibTeX   
     
  • Ram Srinivasan, Eitan Frachtenberg, Olaf Lubeck, Scott Pakin, Jeanine Cook. Neuro-PPM Branch Prediction. In Proceedings of the The Second JILP Championship Branch Prediction Competition (CBP2002), In conjunction with The 39th Annual IEEE/ACM International Symposium on Microarchitecture Micro-39, Orlando, Florida, December 2006. LA-UR 06-7360Third place, "Idealistic" track
      BibTeX    Paper (PDF)   
     
  • Adolfy Hoisie, Gregory Johnson, Darren J. Kerbyson, Mike Lang, Scott Pakin. A Performance Comparison through Benchmarking and Modeling of Three Leading Supercomputers: Blue Gene/L, Red Storm, and Purple. In Proceedings of the IEEE/ACM Conference on Supercomputing (SC'06), Tampa, Florida, November 2006.
      BibTeX    Paper (PDF)   
     
  • Jose C Sancho, Kevin J Barker, Darren J Kerbyson, Kei Davis. Quantifying the Potential Benefit of Overlapping Communication and Computation in Large-Scale Scientific Applications. In Proceedings of the IEEE/ACM Conference on Supercomputing (SC'06), Tampa, FL, November 2006. LA-UR 06-3109
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie. Performance Modeling of the Blue Gene Architecture. In Proceedings of the IEEE John Vincent Atanasoff Int. Symp. on Modern Computing, Sofia, Bulgaria, October 2006.
      BibTeX   
     
  • Kevin J. Barker, Scott Pakin, Darren J. Kerbyson. A Performance Model of the Krak Hydrodynamics Application. In Proceedings of the International Conference on Parallel Processing (ICPP 2006), Columbus, Ohio, 2006. LA-UR 06-1269
      BibTeX    Paper (PDF)   
     
  • Song Jiang, Kei Davis. A Locality-Aware Cooperative Cache Management Protocol to Improve Network File System Performance. In Proceedings of the IEEE International Conference on Distributed Computing Systems (ICDCS 2006), Lisboa, Portugal, July 2006.
      BibTeX   
     
  • Darren J. Kerbyson. A Look at Application Performance Sensitivity to the Bandwidth and Latency of Infiniband Networks. In Proceedings of the Workshop on Communication Architectures for Clusters (CAC), IEEE/ACM Int. Parallel and Distibuted Processing Symposium (IPDPS), Rhodes, Greece, April 2006.
      BibTeX    Paper (PDF)   
     
  • Mark M. Mathis, Darren J. Kerbyson. Dynamic Performance Prediction of an Adaptive Mesh Application. In Proceedings of the Workshop on System Management Tools for Large-Scale Parallel Systems, IEEE/ACM Int. Parallel and Distibuted Processing Symposium (IPDPS), Rhodes, Greece, April 2006.
      BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie. Analysis of Wavefront Algorithms on Large-scale Two-level Heterogeneous Processing Systems. In Proceedings of the Workshop on Unique Chips and Systems (UCAS2), IEEE Int. Symposium on Performance Analysis of Systems and Software (ISPASS), Austin, TX, March 2006.
      BibTeX   
     
  • Eitan Frachtenberg. Process Scheduling for the Parallel Desktop. In Proceedings of the I-SPAN'05, Las Vegas, NV, December 2005. LA-UR 05-0638
      BibTeX    Paper (PDF)   
     
  • Kevin J. Barker, Darren J. Kerbyson. A Performance Model and Scalability Analysis of the HYCOM Ocean Simulation Application. In Proceedings of the IASTED PDCS 2005, Phoenix, AZ., November 2005. LA-UR 05-6601
      BibTeX    Paper (PDF)   
     
  • Roberto Gioiosa, Jose C Sancho, Song Jiang, Fabrizio Petrini, Kei Davis. Transparent, Incremental Checkpointing at Kernel Level: a Foundation for Fault Tolerance for Parallel Computers. In Proceedings of the IEEE/ACM Conference on Supercomputing (SC'05), Seattle, WA, November 2005. LA-UR 04-7465
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Kevin J. Barker, Alan Benner, Ray Hoare, Adolfy Hoisie, Alex K. Jones, Darren J. Kerbyson, Dan Li, Rami Melhem, Ram Rajamony, Eugen Schenfeld, Shuyi Shao, Craig Stunkel, Peter Walker. On the Feasibility of Optical Circuit Switching for High-Performance Computing Systems. In Proceedings of the IEEE/ACM SuperComputing, Seattle, WA, November 2005. LA-UR 05-5985
      BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Kevin J. Barker. Automatic Identification of Application Communication Patterns via Templates. In Proceedings of the Int. Conf. Parallel and Distributed Computing Systems (PDCS), Las Vegas, NV, September 2005. LA-UR 04-7451
      BibTeX   
     
  • Eitan Frachtenberg, Dror G. Feitelson. Pitfalls in Parallel Job Scheduling Evaluation. In Proceedings of the 11th Workshop on Job Scheduling Strategies for Parallel Processing JSSPP'05, In conjunction with ICS-19, Boston, MA, June 2005. LA-UR 05-3474
      BibTeX    Paper (PDF)   
     
  • Scott Pakin. Rapid Development of Application-Specific Network Performance Tests. In Proceedings of the International Conference on Computational Science (ICCS 2005), Workshop on Tools for Program Development and Analysis in Computational Science, Atlanta, Georgia, 3515 149--157, 2005. LA-UR 05-0275
      BibTeX    Paper (PDF)   
     
  • Juan Fernandez, Fabrizio Petrini, Eitan Frachtenberg. Monitoring and Debugging Parallel Software with BCS-MPI on Large-Scale Clusters. In Proceedings of the First Workshop on System Management Tools for Large-Scale Parallel Systems SMTPS'05, Denver, CO, April 2005.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Kevin J. Barker, Nikos Chrisochoides. Practical Performance Model for Optimizing Dynamid Load Balancing of Adaptive Applications. In Proceedings of the International Parallel and Distributed Processing Symposium (IPDPS'05), Denver, Colorado, 2005. LA-UR 04-7457
      BibTeX    Paper (PDF)   
     
  • Roberto Gioiosa, Fabrizio Petrini, Kei Davis, Fabien Lebaillif-Delamare. Analysis of System Overhead on Parallel Computers. In Proceedings of the The 4th IEEE International Symposium on Signal Processing and Information Technology (ISSPIT 2004), Rome, Italy, December 2004.
      BibTeX   
     
  • Kei Davis, Adolfy Hoisie, Greg Johnson, Darren J. Kerbyson, Mike Lang, Scott Pakin, Fabrizio Petrini. A Performance and Scalability Analysis of the BlueGene/L Architecture. In Proceedings of the 2004 International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing 2004), Pittsburgh, PA, November 2004.
      BibTeX    Paper (PDF)   
     
  • Juan Fernandez, Eitan Frachtenberg, Fabrizio Petrini, Kei Davis, Jose Carlos Sancho. Architectural Support for System Software on Large-Scale Clusters. In Proceedings of the International Conference on Parallel Processing ICPP'04, Montreal, Quebec, CA, August 2004.
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Eitan Frachtenberg, Kei Davis, Fabrizio Petrini, Jose Carlos Sancho, Juan Fernandez. Designing Parallel Operating Systems via Parallel Programming. In Proceedings of the Euro-Par'04, Pisa, Italy, August 2004.
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Scott Pakin. Reproducible Network Benchmarks with coNCePTuaL. In Proceedings of the Euro-Par'04, Pisa, Italy, pp. 64--71, 2004. LA-UR 04-6067
      BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Mike Lang, Gene Patino, Hossein Amidi. An Empirical Performance Analysis of Commodity Memories in Commodity Servers. In Proceedings of the ACM Workshop on Memory System Performance, Washington DC, June 2004.
      BibTeX    Paper (PDF)   
     
  • Mark M. Mathis, Darren J. Kerbyson. Performance Modeling of Unstructured Mesh Particle Transport Computations. In Proceedings of the Workshop on Performance Modeling Evaluation and Optimization (PMEO), Int. Parallel and Distributed Processing Symposium (IPDPS), Santa Fe, NM, April 2004.
      BibTeX    Paper (PDF)   
     
  • Jose Carlos Sancho, Fabrizio Petrini, Greg Johnson, Juan Fernandez, Eitan Frachtenberg. On the Feasibility of Incremental Checkpointing for Scientific Computing. In Proceedings of the International Parallel and Distributed Processing Symposium (IPDPS'04), Santa Fe, NM, USA, April 2004.
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Scott Pakin. coNCePTuaL: A Network Correctness and Performance Testing Language. In Proceedings of the International Parallel and Distributed Processing Symposium (IPDPS'04), Santa Fe, New Mexico, 2004. LA-UR 04-3116
      BibTeX    Paper (PDF)   
     
  • Fabrizio Petrini, Darren J. Kerbyson, Scott Pakin. The Case of the Missing Supercomputer Performance: Achieving Optimal Performance on the 8,192 Processors of ASCI Q. In Proceedings of the IEEE/ACM SuperComputing, Phoenix, AZ, November 2003. Best Paper Award
      BibTeX    Paper (PDF)   
     
  • Juan Fernandez, Eitan Frachtenberg, Fabrizio Petrini. BCS-MPI: A New Approach in the System Software Design for Large-Scale Parallel Computers. In Proceedings of the IEEE/ACM Conference on Supercomputing (SC'03), Phoenix, AZ, November 2003.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Jon Beecroft, David Addison, Fabrizio Petrini, Moray McLaren. Quadrics QsNetII: A Network for Supercomputing Applications. In Proceedings of the Proceedings of Hot Chips 15, Palo Alto, California, 2003.
      BibTeX    Paper (PDF)   
     
  • Fabrizio Petrini, Juan Fernandez, Eitan Frachtenberg, Salvador Coll. Scalable Collective Communication on the ASCI Q Machine. In Proceedings of the 11th Hot Interconnects conference HOTi11, Stanford University, Palo Alto, CA, August 2003.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. Modeling the Performance of Large-Scale Systems. In Proceedings of the UK Performance Engineering Workshop (UKPEW03), Warwick, UK, 42--50, July 2003.
      BibTeX   
     
  • Mark M. Mathis, Darren J. Kerbyson, Adolfy Hoisie. A Performance Model of non-Deterministic Particle Transport on Large-Scale Systems. In Proceedings of the Int. Conf. on Computational Science (ICCS) part 3,, Melbourne, Australia, 2659 905--915, June 2003.
      BibTeX    Paper (PDF)   
     
  • Eitan Frachtenberg, Dror G. Feitelson, Juan Fernandez, Fabrizio Petrini. Parallel Job Scheduling under Dynamic Workloads. In Proceedings of the 9th Workshop on Job Scheduling Strategies for Parallel Processing JSSPP'03, In conjunction with HPDC-12 / GGF-8, Seattle, WA, June 2003.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Daniel P. Spooner, Darren J. Kerbyson. Identification of Performance Characteristics from Multiview Trace Analysis. In Proceedings of the Int. Conf. on Computational Science (ICCS) part 3,, Melbourne, Australia, 2659 936--945, June 2003.
      BibTeX    Paper (PDF)   
     
  • Kathryn Berkbigler, Brian Bush, Kei Davis, Adolfy Hoisie, Steve Smith, Cheng Zhou, Kenneth L. Summers, Thomas P. Caudell. Graph Visualization for the Analysis of the Structure and Dynamics of Extreme-Scale Supercomputers. In Proceedings of the ACM Symposium on Software Visualization (SoftVis'03), San Diego, CA, June 2003. Update of Los Alamos National Laboratory LA-UR-02-1929
      BibTeX   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. Performance Modeling of the Earth Simulator and ASCI Q. In Proceedings of the 45th Cray User Group (CUG), Columbus, May 2003.
      BibTeX   
     
  • Eitan Frachtenberg, Dror G. Feitelson, Fabrizio Petrini, Juan Fernandez. Flexible CoScheduling: Dealing with Load Imbalance and Heterogeneous Resources. In Proceedings of the International Parallel and Distributed Processing Symposium (IPDPS'03), Nice, France, April 2003. Best Paper Award
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. A Comparison Between the Earth Simulator and AlphaServer Systems using Predictive Application Performance Models. In Proceedings of the Int. Parallel and Distributed Processing Symposium (IPDPS), Nice, France, April 2003.
      BibTeX    Paper (PDF)   
     
  • Kathryn Berkbigler, Graham Booker, Brian Bush, Kei Davis, Nicholas Moss. Simulating the Quadrics Interconnection Network. In Proceedings of the High Performance Computing Symposium, Advanced Simulation Technologies Conference, Orlando, FL, March 2003.
      BibTeX   
     
  • Kathryn Berkbigler, Brian Bush, Kei Davis, Nicholas Moss, Steve Smith. A la carte: A Simulation Framework for Extreme-Scale Hardware Architectures. In Proceedings of the IASTED International Conference on Modeling and Simulation, Palm Springs, CA, February 2003. LA-UR 02-6987
      BibTeX   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. Comparing Large-Scale Systems using Application Performance Models. In Proceedings of the Int. Workshop on Innovative Architecture, Kauai, HI., January 2003.
      BibTeX   
     
  • Eitan Frachtenberg, Fabrizio Petrini, Juan Fernandez, Scott Pakin, Salvador Coll. STORM: Lightning-Fast Resource Management. In Proceedings of the IEEE/ACM Conference on Supercomputing (SC'02), Baltimore, MD, November 2002.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Scott Pakin, Fabrizio Petrini, Harvey J. Wasserman. Performance Evaluation of An EV7 AlphaSever Machine. In Proceedings of the Los Alamos Computer Science Institute Symposium (LACSI), Santa Fe, NM, October 2002.
      BibTeX    Paper (PDF)   
     
  • Darren J. Kerbyson, Adolfy Hoisie, Harvey J. Wasserman. Use of Predictive Performance Modeling During Large-Scale System Installation. In Proceedings of the PACT-SPDSEC02, Charlottesville, VA., September 2002.
      BibTeX   
     
  • Eitan Frachtenberg, Fabrizio Petrini, Juan Fernandez, Salvador Coll. Scalable Resource Management in High-Performance Computers. In Proceedings of the IEEE International Conference on Cluster Computing Cluster'02, Chicago, IL, September 2002.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Kathryn P. Berkbigler, Brian W. Bush, Kei Davis. An Approach to Extreme-Scale Simulation of Novel Architectures. In Proceedings of the Conference on Systemics, Cybernetics, and Informatics (SCI'02), Orlando, FL, July 2002.
      BibTeX   
     
  • Fabrizio Petrini. Scaling to Thousands of Processors with Buffer Coscheduling. In Proceedings of the Scaling to New Height Workshop, Pittsburgh, PA, May 2002.
      BibTeX    Paper (PDF)   
     
  • Salvador Coll, Fabrizio Petrini, Eitan Frachtenberg, Adolfy Hoisie. Performance Evaluation of I/O Traffic and Placement of I/O Nodes on a High Performance Network. In Proceedings of the Workshop on Communication Architecture for Clusters CAC'02, In conjunction with the International Parallel and Distributed Processing Symposium IPDPS'02, Fort Lauderdale, FL, April 2002.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Darren J. Kerbyson, Harvey J. Wasserman, Adolfy Hoisie. Performance Prediction - A tool for Advanced Architecture Exploration. In Proceedings of the Int. Workshop on Innovative Architecture, Big Island, HI., January 2002.
      BibTeX   
     
  • Darren J. Kerbyson, Hank J. Alme, Adolfy Hoisie, Fabrizio Petrini, Harvey J. Wasserman, Mike L. Gittings. Predictive Performance and Scalability Modeling of a Large-Scale Application. In Proceedings of the IEEE/ACM SuperComputing, Denver, CO, November 2001.
      BibTeX    Paper (PDF)   
     
  • Fabrizio Petrini, Salvador Coll, Eitan Frachtenberg, Adolfy Hoisie. Hardware- and Software-Based Collective Communication on the Quadrics Network. In Proceedings of the 1st IEEE International Symposium on Network Computing and Applications NCA'01, Boston, MA, October 2001.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Salvador Coll, Eitan Frachtenberg, Fabrizio Petrini, Adolfy Hoisie, Leonid Gurvits. Using Multirail Networks in High-Performance Clusters. In Proceedings of the IEEE International Conference on Cluster Computing Cluster'01, Newport Beach, CA, October 2001.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Eitan Frachtenberg, Fabrizio Petrini, Salvador Coll, Wu-chun Feng. Gang Scheduling with Lightweight User-Level Communication. In Proceedings of the Workshop on Scheduling and Resource Management for Cluster Computing SRMCC'01, In conjunction with the International Conference on Parallel Processing ICPP'01, Valencia, Spain, September 2001.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Fabrizio Petrini, Wu-chun Feng, Adolfy Hoisie, Salvador Coll, Eitan Frachtenberg. The Quadrics Network (QsNet): High-Performance Clustering Technology. In Proceedings of the 9th Hot Interconnects conference HOTi9, Stanford University, Palo Alto, CA, August 2001.
      Abstract (text)    BibTeX    Paper (PDF)    Presentation (PDF)   
     
  • Fabrizio Petrini, Wu-Cheng Feng. Buffered Coscheduling: A New Methodology fo Multitasking Parallel Jobs on Distributed Systems. In Proceedings of the International Parallel and Distributed Processing Symposium (IPDPS'00), Cancun, MX, 2000.
      BibTeX    Paper (PDF)   
     
  • Fabrizio Petrini, Wu-Cheng Feng. Time-Sharing Parallel Jobs in the Presence of Multiple Resource Requirements. In Proceedings of the 6th Workshop on Job Scheduling Strategies for Parallel Processing JSSPP'00, In conjunction with IPDPS'00, 2000.
      BibTeX    Paper (PDF)   
     
  • Fabrizio Petrini, Wu-Cheng Feng. Scheduling with Global Information in Distributed Systems. In Proceedings of the In Proceedings of the 20th International Conference on Distributed Computing Systems, Taipei, Taiwan, Repulic of China, 2000.
      BibTeX    Paper (PDF)   
     
  • Fabrizio Petrini, Federico Basseti, Alex Gerbessiotis. A New Approach to Parallel Program Development and Scheduling of Parallel Jobs on Distributed Systems. In Proceedings of the In 1999 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV, July 1999.
      BibTeX    Paper (PDF)   
     
  • Adolfy Hoisie, Olaf M. Lubek, Harvey J. Wasserman. Scalability Analysis of Multidimensional Wavefront Algorithms on Large-Scale SMP Clusters. In Proceedings of the Frontiers of Massively Parallel Computing, Annapolis, MD, 1999.
      BibTeX    Paper (PDF)   
     
  • Fabrizio Petrini, Wu-Cheng Feng. Efficient Scheduling of Parallel Jobs on Massively Parallel Systems. In Proceedings of the 7th International Conference on Advanced Computing and Comunications, Rourkee, India, 1999.
      BibTeX    Paper (PDF)   
     
  • Yong Luo, Olaf M. Lubek, Harvey J.and Basseti Wasserman, Kirk w. Cameron. Development and Validation of Hierarchical Memory Model Incorporating CPU- and Memory Operation Overlap. In Proceedings of the First International Workshop on Software and Performance, Santa Fe, NM, 152--162, October 1998.
      BibTeX    Paper (PDF)   
     

    • Technical Reports

  • Kevin Barker, Kei Davis, Adolfy Hoisie, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. PAL Roadrunner Report 7: Pre-Delivery Performance Testing of Roadrunner (17CUs). technical report, August 2008.
      BibTeX   
     
  • Kevin Barker, Kei Davis, Adolfy Hoisie, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. An Early Performance Evaluation of the Intel Nehalem Processor. technical report, May 2008.
      BibTeX   
     
  • Kevin Barker, Kei Davis, Adolfy Hoisie, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. PAL Roadrunner Report 6: A First Look at the Performance of One Roadrunner CU. technical report, April 2008.
      BibTeX   
     
  • Kevin Barker, Kei Davis, Adolfy Hoisie, Darren J. Kerbyson, Mike Lang, Scott Pakin, Jose C. Sancho. PAL Roadrunner Report 5: A Note on Application Performance of the eDP version of the Cell. technical report, October 2007.
      BibTeX   
     
  • Adolfy Hoisie, Greg Johnson, Darren J. Kerbyson, Mike Lang, Jose C. Sancho, Ram Srinivasan. PAL Roadrunner Report 4: Early Performance Testing of the eDP Version of the Cell. technical report, July 2007.
      BibTeX   
     
  • Darren J. Kerbyson, Mike Lang, Greg Johnson. PAL Roadrunner Report 2: Application Specific Optimization of Infiniband Networks. technical report, October 2006.
      BibTeX   
     
  • Kei Davis. Self-Healing High-Performance Parallel Computers. Los Alamos National Laboratory Laboratory Directed Research and Development, Annual Report 2005 technical report, April 2006.
      BibTeX   
     
  • Eitan Frachtenberg. Process Coordination for Commodity Systems. Los Alamos National Laboratory technical report. LA-UR 04-7256, December 2004.
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Adolfy Hoisie, Darren Kerbyson, Scott Pakin, Fabrizio Petrini, Harvey J. Wasserman, Juan Fernandez. Indentifying and Eliminating the Performance Variability on the ASCI Q Machine. technical report, 2003.
      BibTeX    Paper (PDF)   
     
  • Adolfy Hoisie, Darren Kerbyson, Fabrizio Petrini, Harvey J. Wasserman. ASCI Q Report 7: 1024-Node, 1.25-GHz EV68 CPU 66-MHz PCI Bus EFT-4 Tests. technical report, 2002.
      BibTeX   
     
  • Adolfy Hoisie, Darren Kerbyson, Fabrizio Petrini, Harvey J. Wasserman. ASCI Q Report 6: 512-Node, 66-MHz PCI Bus EFT-3 Tests. technical report, 2002.
      BibTeX   
     
  • Salvador Coll, Eitan Frachtenberg, Fabrizio Petrini, Adolfy Hoisie, Leonid Gurvits. Static Allocation of Multirail Networks. Los Alamos National Laboratory technical report. LA-UR 01-3896, July 2001.
      Abstract (text)    BibTeX    Paper (PDF)   
     
  • Harvey J. Wasserman, Yong Luo, Olaf M. Lubek, Federico Basseti. Performance Evaluation of the SGI Origin2000: A Memory-Centric Characterization of Los Alamos National Laboratory ASCI Applications. technical report, 1998.
      BibTeX   
     

    • Poster Sessions

  • Mark M. Mathis, Darren J. Kerbyson. Performance and Scalability of Particle Transport Calculations. In DOE High Speed Computing Conference, Newport Beach, OR, April 2004.
      BibTeX   
     
  • Juan Fernandez, Fabrizio Petrini, Eitan Frachtenberg. Buffered Coscheduled (BCS) MPI: A New Approach in the System Software Design for Large-Scale Parallel Computers. In CCS Division Review Committee, Los Alamos National Laboratory, April 2004.
      BibTeX    Paper (PDF)   
     
  • Mike Lang, Scott Pakin, Darren J. Kerbyson, Fabrizio Petrini, Harvey J. Wasserman, Adolfy Hoisie. Performance of SGI's Altix. In IEEE/ACM Supercomputing, Phoenix, AZ, November 2003.
      BibTeX   
     
  • Juan Fernandez, Fabrizio Petrini, Eitan Frachtenberg. Buffered Coscheduled (BCS) MPI. In The conference on High-Speed Computing, Glenden Beach, OR, April 2003. Invited work.
      BibTeX    Paper (PDF)   
     
  • Mark M. Mathis, Darren J. Kerbyson. Performance Modeling of MCNP on Large-Scale Systems. In Los Alamos Computer Science Institue Symposium (LACSI), Santa Fe, NM, October 2002.
      BibTeX   
     
  • Daniel P. Spooner, Stephen A. Jarvis, Junwei Cao, Graham R. Nudd, Subhash Saini, Darren J. Kerbyson. Performance-based Workload Management for Grid Computing. In Los Alamos Computer Science Institue Symposium (LACSI), Santa Fe, NM, October 2002.
      BibTeX   
     
  • Eitan Frachtenberg, Juan Fernandez, Fabrizio Petrini, Scott Pakin. STORM: A Scalable TOol for Resource Management. In The conference on High-Speed Computing, Glenden Beach, OR, April 2002. Invited work. A more recent (and nicer) version of the poster can be found here. Yet another version was shown at the Los Alamos National Laboratory booth at IEEE/ACM Conference on Supercomputing (SC'02) here
      BibTeX    Paper   
     
  • Kathryn Berkbigler, Brian Bush, Kei Davis. Extreme-Scale Architecture Simulation. In 2001 International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing 2001), Denver, CO, November 2001.
      BibTeX   
     
  • Hank J. Alme, Darren J. Kerbyson, Adolfy Hoisie, Fabrizio Petrini, David M. Race, Lori A. Pritchett, John Daly. Performance Studies on Compaq Clusters, Including Multi-Rail Performance on Standard Benchmarks. In IEEE/ACM Supercomputing, Denver, CO, November 2001.
      BibTeX   
     

    • Talks

  • Eitan Frachtenberg. Flexible CoScheduling: Dealing with Load Imbalance and Heterogeneous Resources. In International Parallel and Distributed Processing Symposium (IPDPS'03), Nice, France, April 2003. Best Paper Award.
    Download slides
     
     

    • Tutorials

  • Kei Davis, Fabrizio Petrini. Achieving Usability and Efficiency in Large-Scale Parallel Computing Systems. In European Conference on Parallel Computing (Euro-Par 2004), Pisa, Italy, August 2004.
     
     

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